IRRI SERVICE LABORATORIES
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Quality control SNP panels (Global rice QC 24-SNP panel, Indica rice QC 10-SNP panel)
Quality control SNP panels (Global rice QC 24-SNP panel, Indica rice QC 10-SNP panel)
Global rice QC 24-SNP Panel
Global rice QC 24-SNP Panel
This SNP set is optimized to detect up to 99.9% of cross contaminations between rice germplasms. It has an average of 10 polymorphic SNPs between accessions from the rice gene bank. It can uniquely distinguish up to 90% of the published 3024 sequenced rice genomes. It is an affordable and effective genotyping platform for seed quality control and assurance.
Indica rice QC 10-SNP panel
Indica rice QC 10-SNP panel
On an average, it has 40% polymorphism across all possible pairwise combinations of the indica germplasm. This set has at least 1 polymorphic marker in 95% of crosses made within the IRRI breeding pool or any materials within indica subspecies. This set makes a very affordable and effective panel for employing quality control methods such as hybridity (F1) testing and line verification.
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